GenDBScraper Documentation

License

This documentation is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.

The software is licensed under the MIT license. See LICENSE in the project’s root directory.

Get GenDBScraper

GenDBScraper is developed at github: https://github.com/pflu-sbw25/GenDBScraper.

To clone the repository:

git clone https://github.com/pflu-sbw25/GenDBScraper.git

To download the latest snapshot as a zip file click here.

Contents:

• Reference Manual
• Example notebook showcasing the use of the PseudomonasDotCom Scraper as a programmable interface to the pseudomonas.com database
  • List of content
  • Load required python modules
  • Setting things up
  • Retrieve the data
  • Display the data
    • List all keys in the results dict
    • Get the data for one queried gene
    • Display one table
    • Display a given table for all three genes
    • Select all rows with a given value in one column
  • Save to disk
  • Read results from disk
  • Example for a query with references
    • Display references with proper html links

Indices and tables

• Index
• Module Index
• Search Page